Information for 4-CGCAATGA (Motif 11)

A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T A C G T A C T G A G T C A C T G
p-value:1e-3
log p-value:-8.621e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif26.47%
Number of Background Sequences with motif2948.3
Percentage of Background Sequences with motif6.24%
Average Position of motif in Targets79.8 +/- 38.0bp
Average Position of motif in Background99.7 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCAATGA--
GGYAATGAAA
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T A C G T
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

NR1H4/MA1110.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCAATGA----
-TCAATGACCTA
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A

EN2/MA0642.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGCAATGA--
CCCAATTAGC
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T A C G T
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

CEBPG/MA0838.1/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CGCAATGA
ATTGCGCAAT--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A
T C G A C A G T C A G T C T A G G A T C C T A G G A T C C T G A C G T A A G C T A C G T A C G T

CEBPD/MA0836.1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CGCAATGA
ATTGCGCAAT--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A
T C G A A C G T A C G T C T A G G A T C T C A G G T A C G T C A C G T A A G C T A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCAATGA--
RGCAATNAAA
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T A C G T
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

CEBPB/MA0466.2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGCAATGA
ATTGCGCAAT--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A
T C G A G A C T C A G T C T A G G A T C T C A G G T A C T G C A G C T A A G C T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCAATGA-
-CCAATTAG
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGCAATGA-
GACAATGNN
 A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

CEBPE/MA0837.1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGCAATGA
ATTGCGCAAT--
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C C G T A C G T A A C G T A C T G C G T A
T C G A G A C T C A G T C T A G G A T C T C A G G T A C G T C A C G T A A G C T A C G T A C G T