Information for 4-GAGCACGTAC (Motif 9)

A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
Reverse Opposite:
A C T G C G A T C G T A A G T C A C T G A C G T A C T G A G T C A G C T A G T C
p-value:1e-4
log p-value:-1.110e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif11.76%
Number of Background Sequences with motif206.4
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets137.5 +/- 46.9bp
Average Position of motif in Background103.6 +/- 67.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF1A/MA1106.1/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GAGCACGTAC
NNGCACGTNC
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GAGCACGTAC--
--GCACGTACCC
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:GAGCACGTAC
--GCACGTAY
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GAGCACGTAC
-BGCACGTA-
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GAGCACGTAC
--GCACGTNC
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAGCACGTAC
NGKCACGTGM
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C

MNT/MA0825.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGCACGTAC-
-ACCACGTGCC
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C A C G T
A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGCACGTAC
NGKCACGTGM
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C
T C A G T A C G C A G T T G A C C G T A A G T C T C A G G C A T A C T G G T A C

BHLHE40/MA0464.2/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGCACGTAC-
-ATCACGTGAC
 A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C A C G T
A C G T T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C

PB0043.1_Max_1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGCACGTAC-----
TGACCACGTGGTCGGG
 A C G T A C T G C T G A A C T G G T A C C G T A T G A C A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C A G T C A T G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T A T G C T C A G C A T G C A T G