Information for 15-HCAGTAGGGGCM (Motif 20)

G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
Reverse Opposite:
C A T G C A T G G A T C G A T C G T A C G A T C G C A T C G T A G A T C C G A T C A T G C A T G
p-value:1e-27
log p-value:-6.426e+01
Information Content per bp:1.487
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets107.6 +/- 53.8bp
Average Position of motif in Background60.0 +/- 39.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-HCAGTAGGGGCM
CACAGCAGGGGG-
 A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----HCAGTAGGGGCM
GCACAYAGTAGGKCY-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--HCAGTAGGGGCM-
DCHCAGCAGGRGGCC
 A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---HCAGTAGGGGCM----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-HCAGTAGGGGCM-------
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---HCAGTAGGGGCM-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----HCAGTAGGGGCM
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

MYB/MA0100.3/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-HCAGTAGGGGCM
NNCAGTTGNN---
 A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----HCAGTAGGGGCM
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--HCAGTAGGGGCM
DCTCAGCAGG----
 A C G T A C G T G T A C G T A C C G T A C T A G G C A T C G T A C T A G C A T G C T A G C T A G G T A C G T A C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T