Information for 4-CTGCATTA (Motif 24)

A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A
Reverse Opposite:
G C A T T G C A C G T A C A G T A T C G T A G C C G T A C T A G
p-value:1e-25
log p-value:-5.964e+01
Information Content per bp:1.794
Number of Target Sequences with motif3000.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif2491.3
Percentage of Background Sequences with motif9.19%
Average Position of motif in Targets99.9 +/- 55.6bp
Average Position of motif in Background100.0 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CTGCATTA--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

POU5F1/MA1115.1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTGCATTA
NATTTGCATNN
 A C G T A C G T A C G T A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTGCATTA--
TTGCCCGGATTAGG
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGCATTA--
TTTCATTRCC
 A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T
G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGCATTA
NGGGATTA
 A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTGCATTA--
--YCATTAMC
 A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T
A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCATTA-
-GGGATTAA
 A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGCATTA-
ATTGCATCAK
 A C G T A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCATTA-----
-TGAATTATGCAT
 A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CTGCATTA----
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G T A G C G T C A C G A T A C G T C G T A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A