Information for 13-ATGTAGGTCA (Motif 30)

C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A A G T C A T G C A C G T C G T A A G T C C T G A A C G T
p-value:1e-24
log p-value:-5.593e+01
Information Content per bp:1.966
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.2 +/- 54.1bp
Average Position of motif in Background50.6 +/- 47.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---ATGTAGGTCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--ATGTAGGTCA
ATAAGTAGGTCA
 A C G T A C G T C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:ATGTAGGTCA
AAYTAGGTCA
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:ATGTAGGTCA
AAYTAGGTCA
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-ATGTAGGTCA----
AAWCTAGGTCARDNN
 A C G T C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A A C G T A C G T A C G T A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORB/MA1150.1/Jaspar

Match Rank:6
Score:0.84
Offset:0
Orientation:forward strand
Alignment:ATGTAGGTCA-
AATTAGGTCAC
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:ATGTAGGTCA
ATCAAGGTCA
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-ATGTAGGTCA-
WAABTAGGTCAV
 A C G T C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A A C G T
C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.73
Offset:4
Orientation:forward strand
Alignment:ATGTAGGTCA
----AGGTCA
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ATGTAGGTCA-
-TCAAGGTCAT
 C G T A A G C T A C T G A C G T G T C A A T C G A C T G A C G T A G T C G T C A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T