Information for 22-CCGTAGTT (Motif 48)

A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A G T C A C T G A C T G
p-value:1e-7
log p-value:-1.762e+01
Information Content per bp:1.530
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets120.0 +/- 52.6bp
Average Position of motif in Background114.8 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCGTAGTT---
-ACTAGTTAAC
 A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCGTAGTT
CCTTTGTT
 A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0159.1_Rfx4_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCGTAGTT-----
TACCCTAGTTACCGA
 A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGTAGTT-
NCCATTGTTC
 A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0161.1_Rxra_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGTAGTT------
TCGCGAAGGTTGTACT
 A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCGTAGTT-----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGTAGTT--
CCATTGTTYB
 A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0106.1_Arid5a_2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CCGTAGTT----
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCGTAGTT-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCGTAGTT---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A