Information for 7-GCGTCCATTG (Motif 15)

A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G
Reverse Opposite:
A G T C C G T A G T C A A C G T C T A G C T A G C T G A A G T C C T A G A T G C
p-value:1e-30
log p-value:-6.977e+01
Information Content per bp:1.843
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets109.2 +/- 63.2bp
Average Position of motif in Background64.9 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCGTCCATTG---
--NNCCATTGTNN
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GCGTCCATTG----
----CCATTGTTYB
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GCGTCCATTG---
----CCATTGTTC
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCGTCCATTG--------
-CNNNTATTGTTCNNNNN
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGTCCATTG--
---CTCATTGTC
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCGTCCATTG--
----CCWTTGTY
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCGTCCATTG---
---NCCATTGTTC
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCGTCCATTG---
---NCCATTGTTY
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCGTCCATTG--
----CCTTTGTT
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCGTCCATTG------
ANNTCCATTGTTCNNN
 A T C G A G T C A C T G A G C T G A T C A G T C C G T A A C G T A C G T T A C G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T