Information for 2-GCCTTTATCCTA (Motif 2)

T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
Reverse Opposite:
A C G T C G T A C T A G A C T G C G T A A C G T C T G A C G T A G C T A A C T G C T A G A G T C
p-value:1e-42
log p-value:-9.774e+01
Information Content per bp:1.789
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.7 +/- 52.8bp
Average Position of motif in Background114.6 +/- 10.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCTTTATCCTA
-CCATTGTTTT-
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCTTTATCCTA
-CCTTTGTTTT-
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTTATCCTA
NNCAATTANN---
 A C G T T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCTTTATCCTA
-YCTTTGTTCC-
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCTTTATCCTA
GGCCATTAAC---
 A C G T T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCTTTATCCTA
-CCTTTGTT---
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCTTTATCCTA
NCCATTGTTC--
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTTATCCTA
NNGCACCTTTCTCC--
 A C G T A C G T A C G T A C G T T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCTTTATCCTA
NCCATTGTTY--
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCTTTATCCTA----
GATAACATCCTAGTAG
 T A C G A G T C G T A C C G A T A C G T A G C T G T C A C G A T G T A C A G T C A C G T T G C A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G