Information for 18-YCGAATGGAT (Motif 40)

A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T
Reverse Opposite:
C G T A A C G T A G T C G A T C C G T A A C G T A G C T A G T C A C T G C T G A
p-value:1e-15
log p-value:-3.585e+01
Information Content per bp:1.825
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets90.1 +/- 51.6bp
Average Position of motif in Background65.5 +/- 9.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)2.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---YCGAATGGAT---
ACTATGAATGAATGAT
 A C G T A C G T A C G T A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:YCGAATGGAT----
----ATTGATTYND
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:YCGAATGGAT--
--NTATYGATCH
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T
A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YCGAATGGAT--
--NTATCGATTA
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:YCGAATGGAT-
---TATTGAYY
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:YCGAATGGAT---
---AATGGAAAAT
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YCGAATGGAT---
---TATCGATNAN
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YCGAATGGAT---
-TGATTGGCTANN
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

SPDEF/MA0686.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--YCGAATGGAT
ACCCGGATGTA-
 A C G T A C G T A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T

CUX2/MA0755.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YCGAATGGAT--
--TTATCGATTA
 A G C T A G T C A C T G T C G A G T C A A C G T C A T G A C T G G T C A G C A T A C G T A C G T
A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A