Information for 6-AATCTGCGAAGN (Motif 7)

G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
Reverse Opposite:
G A T C G A T C G C A T G C A T G A T C C T A G G T A C C G T A C A T G G C T A C G A T C A G T
p-value:1e-35
log p-value:-8.170e+01
Information Content per bp:1.451
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.7 +/- 64.6bp
Average Position of motif in Background191.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AATCTGCGAAGN
AAGGTGTKAA--
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AATCTGCGAAGN-
--NNTGCCAAGNN
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G A C G T
A C G T A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

RBPJ/MA1116.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AATCTGCGAAGN
--CCTGGGAAAG
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T A C G T A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G

PB0022.1_Gata5_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AATCTGCGAAGN----
TAAACTGATAAGAAGAT
 A C G T G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AATCTGCGAAGN
--GGTGCCAAGT
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AATCTGCGAAGN
---TTGCCAAG-
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AATCTGCGAAGN
--CSTGGGAAAD
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATCTGCGAAGN
-ATATGCAAAT-
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATCTGCGAAGN
-TTCTTGGAAAN
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATCTGCGAAGN
-AGGTGTTAAT-
 G T C A G C T A C G A T G T A C C G A T C A T G G A T C C T A G C G T A C G T A C T A G C T A G
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T