Information for 3-ATGGYCTAAA (Motif 8)

C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
Reverse Opposite:
C G A T C A G T C A G T C G T A C T A G T C A G A G T C G T A C C G T A A C G T
p-value:1e-34
log p-value:-7.900e+01
Information Content per bp:1.720
Number of Target Sequences with motif1850.0
Percentage of Target Sequences with motif7.72%
Number of Background Sequences with motif1510.9
Percentage of Background Sequences with motif5.78%
Average Position of motif in Targets99.6 +/- 55.3bp
Average Position of motif in Background101.9 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATGGYCTAAA
GTTAATGGCC----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATGGYCTAAA--
NNHYTGACCTAGWTT
 A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATGGYCTAAA
NNATAAGGNN----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATGGYCTAAA
TAATGGCGGNC-
 A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATGGYCTAAA
CAAGATGGCGGC--
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATGGYCTAAA
TTTNATTGCY----
 A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
A C G T A C G T C G A T A C G T G T C A A C G T C A G T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATGGYCTAAA-
NTGACCTAATT
 C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A A C G T
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATGGYCTAAA
NTAATKGTTT---
 A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATGGYCTAAA--
TTATGTACTAATAA
 A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A A C G T A C G T
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

NEUROD1/MA1109.1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ATGGYCTAAA
GGACAGATGGCAG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C T G A C T G A G T C G A T C G C A T G T C A G T C A C G T A
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G A C G T A C G T A C G T