| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.605e+01 | 0.0000 | 12423.0 | 51.82% | 13114.8 | 50.14% | motif file (matrix) |
svg |
| 2 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-6 | -1.440e+01 | 0.0001 | 679.0 | 2.83% | 612.8 | 2.34% | motif file (matrix) |
svg |
| 3 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.417e+01 | 0.0001 | 1048.0 | 4.37% | 984.8 | 3.76% | motif file (matrix) |
svg |
| 4 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.385e+01 | 0.0001 | 2420.0 | 10.09% | 2404.7 | 9.19% | motif file (matrix) |
svg |
| 5 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.288e+01 | 0.0002 | 3767.0 | 15.71% | 3834.0 | 14.66% | motif file (matrix) |
svg |
| 6 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.272e+01 | 0.0002 | 4220.0 | 17.60% | 4317.5 | 16.51% | motif file (matrix) |
svg |
| 7 |
| ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer | 1e-5 | -1.182e+01 | 0.0004 | 15.0 | 0.06% | 4.6 | 0.02% | motif file (matrix) |
svg |
| 8 |
| MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer | 1e-5 | -1.160e+01 | 0.0005 | 2340.0 | 9.76% | 2344.0 | 8.96% | motif file (matrix) |
svg |
| 9 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-4 | -1.150e+01 | 0.0005 | 8916.0 | 37.19% | 9380.6 | 35.86% | motif file (matrix) |
svg |
| 10 |
| Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -1.132e+01 | 0.0005 | 1895.0 | 7.90% | 1880.7 | 7.19% | motif file (matrix) |
svg |
| 11 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-4 | -1.085e+01 | 0.0008 | 1970.0 | 8.22% | 1963.5 | 7.51% | motif file (matrix) |
svg |
| 12 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-4 | -1.077e+01 | 0.0008 | 2964.0 | 12.36% | 3010.9 | 11.51% | motif file (matrix) |
svg |
| 13 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-4 | -1.008e+01 | 0.0014 | 3319.0 | 13.84% | 3395.9 | 12.98% | motif file (matrix) |
svg |
| 14 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.783e+00 | 0.0017 | 376.0 | 1.57% | 334.5 | 1.28% | motif file (matrix) |
svg |
| 15 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-4 | -9.716e+00 | 0.0017 | 1013.0 | 4.23% | 980.0 | 3.75% | motif file (matrix) |
svg |
| 16 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-4 | -9.700e+00 | 0.0017 | 3267.0 | 13.63% | 3345.7 | 12.79% | motif file (matrix) |
svg |
| 17 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.665e+00 | 0.0017 | 2530.0 | 10.55% | 2565.8 | 9.81% | motif file (matrix) |
svg |
| 18 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -9.473e+00 | 0.0018 | 5160.0 | 21.52% | 5369.9 | 20.53% | motif file (matrix) |
svg |
| 19 |
| ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer | 1e-4 | -9.266e+00 | 0.0021 | 1770.0 | 7.38% | 1770.3 | 6.77% | motif file (matrix) |
svg |
| 20 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-4 | -9.247e+00 | 0.0021 | 338.0 | 1.41% | 299.6 | 1.15% | motif file (matrix) |
svg |
| 21 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-3 | -8.944e+00 | 0.0027 | 1981.0 | 8.26% | 1995.1 | 7.63% | motif file (matrix) |
svg |
| 22 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-3 | -8.744e+00 | 0.0031 | 3446.0 | 14.37% | 3549.5 | 13.57% | motif file (matrix) |
svg |
| 23 |
| Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer | 1e-3 | -8.675e+00 | 0.0032 | 7328.0 | 30.57% | 7717.8 | 29.51% | motif file (matrix) |
svg |
| 24 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.591e+00 | 0.0033 | 1864.0 | 7.77% | 1876.1 | 7.17% | motif file (matrix) |
svg |
| 25 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-3 | -8.450e+00 | 0.0037 | 3207.0 | 13.38% | 3300.0 | 12.62% | motif file (matrix) |
svg |
| 26 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-3 | -8.386e+00 | 0.0038 | 4775.0 | 19.92% | 4975.2 | 19.02% | motif file (matrix) |
svg |
| 27 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.249e+00 | 0.0041 | 753.0 | 3.14% | 723.6 | 2.77% | motif file (matrix) |
svg |
| 28 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer | 1e-3 | -8.058e+00 | 0.0048 | 1918.0 | 8.00% | 1939.6 | 7.42% | motif file (matrix) |
svg |
| 29 |
| TATA-Box(TBP)/Promoter/Homer | 1e-3 | -7.990e+00 | 0.0050 | 4042.0 | 16.86% | 4197.1 | 16.05% | motif file (matrix) |
svg |
| 30 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-3 | -7.956e+00 | 0.0050 | 1703.0 | 7.10% | 1715.0 | 6.56% | motif file (matrix) |
svg |
| 31 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-3 | -7.641e+00 | 0.0066 | 2008.0 | 8.38% | 2039.1 | 7.80% | motif file (matrix) |
svg |
| 32 |
| LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.518e+00 | 0.0073 | 372.0 | 1.55% | 341.1 | 1.30% | motif file (matrix) |
svg |
| 33 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.330e+00 | 0.0085 | 755.0 | 3.15% | 732.4 | 2.80% | motif file (matrix) |
svg |
| 34 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-3 | -7.303e+00 | 0.0085 | 543.0 | 2.26% | 515.6 | 1.97% | motif file (matrix) |
svg |
| 35 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.253e+00 | 0.0087 | 916.0 | 3.82% | 899.9 | 3.44% | motif file (matrix) |
svg |
| 36 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.064e+00 | 0.0102 | 684.0 | 2.85% | 661.9 | 2.53% | motif file (matrix) |
svg |
| 37 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -6.861e+00 | 0.0121 | 5329.0 | 22.23% | 5599.9 | 21.41% | motif file (matrix) |
svg |
| 38 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.732e+00 | 0.0134 | 1181.0 | 4.93% | 1180.3 | 4.51% | motif file (matrix) |
svg |
| 39 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.697e+00 | 0.0135 | 2590.0 | 10.80% | 2669.0 | 10.20% | motif file (matrix) |
svg |
| 40 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -6.256e+00 | 0.0205 | 3662.0 | 15.27% | 3821.4 | 14.61% | motif file (matrix) |
svg |
| 41 |
| Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer | 1e-2 | -6.162e+00 | 0.0220 | 189.0 | 0.79% | 166.5 | 0.64% | motif file (matrix) |
svg |
| 42 |
| STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.002e+00 | 0.0252 | 1508.0 | 6.29% | 1532.4 | 5.86% | motif file (matrix) |
svg |
| 43 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.914e+00 | 0.0269 | 5040.0 | 21.02% | 5308.8 | 20.30% | motif file (matrix) |
svg |
| 44 |
| Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer | 1e-2 | -5.896e+00 | 0.0269 | 195.0 | 0.81% | 173.3 | 0.66% | motif file (matrix) |
svg |
| 45 |
| DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer | 1e-2 | -5.751e+00 | 0.0302 | 174.0 | 0.73% | 153.2 | 0.59% | motif file (matrix) |
svg |
| 46 |
| PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.327e+00 | 0.0452 | 1812.0 | 7.56% | 1863.4 | 7.12% | motif file (matrix) |
svg |
| 47 |
| TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer | 1e-2 | -5.293e+00 | 0.0458 | 7032.0 | 29.33% | 7474.9 | 28.58% | motif file (matrix) |
svg |
| 48 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.281e+00 | 0.0458 | 3330.0 | 13.89% | 3484.0 | 13.32% | motif file (matrix) |
svg |
| 49 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -5.158e+00 | 0.0502 | 1072.0 | 4.47% | 1083.5 | 4.14% | motif file (matrix) |
svg |
| 50 |
| Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer | 1e-2 | -5.145e+00 | 0.0502 | 908.0 | 3.79% | 911.4 | 3.48% | motif file (matrix) |
svg |
| 51 |
| STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-2 | -5.109e+00 | 0.0507 | 1494.0 | 6.23% | 1529.1 | 5.85% | motif file (matrix) |
svg |
| 52 |
| HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer | 1e-2 | -5.069e+00 | 0.0517 | 3723.0 | 15.53% | 3910.6 | 14.95% | motif file (matrix) |
svg |
| 53 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.993e+00 | 0.0548 | 3388.0 | 14.13% | 3552.0 | 13.58% | motif file (matrix) |
svg |
| 54 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.875e+00 | 0.0605 | 2509.0 | 10.47% | 2613.3 | 9.99% | motif file (matrix) |
svg |
| 55 |
| FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer | 1e-2 | -4.819e+00 | 0.0629 | 607.0 | 2.53% | 600.2 | 2.29% | motif file (matrix) |
svg |
| 56 |
| HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.810e+00 | 0.0629 | 216.0 | 0.90% | 199.8 | 0.76% | motif file (matrix) |
svg |
| 57 |
| Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.805e+00 | 0.0629 | 356.0 | 1.48% | 341.0 | 1.30% | motif file (matrix) |
svg |
| 58 |
| PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer | 1e-2 | -4.771e+00 | 0.0629 | 621.0 | 2.59% | 615.9 | 2.35% | motif file (matrix) |
svg |
| 59 |
| ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.692e+00 | 0.0665 | 1721.0 | 7.18% | 1776.9 | 6.79% | motif file (matrix) |
svg |
| 60 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.688e+00 | 0.0665 | 2984.0 | 12.45% | 3125.0 | 11.95% | motif file (matrix) |
svg |
| 61 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -4.674e+00 | 0.0665 | 1685.0 | 7.03% | 1738.7 | 6.65% | motif file (matrix) |
svg |
| 62 |
| LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer | 1e-2 | -4.661e+00 | 0.0665 | 2068.0 | 8.63% | 2146.5 | 8.21% | motif file (matrix) |
svg |