Information for 10-AGAATAATCT (Motif 19)

T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T
Reverse Opposite:
C G T A C T A G T G C A G C A T G A C T G T C A C G A T A C G T A G T C A C G T
p-value:1e-7
log p-value:-1.698e+01
Information Content per bp:1.727
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif956.7
Percentage of Background Sequences with motif1.92%
Average Position of motif in Targets81.6 +/- 56.0bp
Average Position of motif in Background100.5 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AGAATAATCT-
---YTAATCCY
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGAATAATCT-
---TTAATCCT
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGAATAATCT-----
GNNNATTAATCCCTNCN
 A C G T A C G T T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAATAATCT
--AATAATT-
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAATAATCT-----
GANNATTAATCCCTNNN
 A C G T A C G T T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGAATAATCT-----
NNNAATTAATCCCCNCN
 A C G T A C G T T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGAATAATCT-
---TTAATCCG
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGAATAATCT-
---TTAATCCC
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGAATAATCT------
--NNTAATCCNGNCNN
 T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGAATAATCT------
NNNATTAATCCGNTTNA
 A C G T T G C A T C A G C G T A C G T A C A G T C T G A C G T A A C G T G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A