Information for 5-TTTWATTAGCAT (Motif 6)

A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T
Reverse Opposite:
C G T A A C G T A C T G A T G C G C A T C G T A C G T A A G C T C G T A C T G A C G T A C G T A
p-value:1e-9
log p-value:-2.302e+01
Information Content per bp:1.793
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif221.0
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets120.5 +/- 51.2bp
Average Position of motif in Background102.7 +/- 56.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0144.1_Pou2f2/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTTWATTAGCAT----
TNTAATTTGCATANNN
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTWATTAGCAT-
-CTCATTTGCATW
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T
A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTWATTAGCAT-
-BTVATTWGCATA
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T
A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTTWATTAGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTTWATTAGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TTTWATTAGCAT--
--TAATTTGCATAA
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T
A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTWATTAGCAT
TTTTATTRGN--
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTWATTAGCAT
NTTTTATTGG---
 A C G T A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTTWATTAGCAT---
-CTAATTTGCATATT
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T A C G T
A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TTTWATTAGCAT--
--TAATTTGCATAA
 A C G T A C G T A G C T G C A T C T G A C G A T C G A T C G T A T A C G A G T C T G C A A C G T A C G T A C G T
A C G T A C G T C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A