Information for 2-ATGAACATTG (Motif 9)

C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
Reverse Opposite:
A T G C C G T A G T C A C G A T C T A G G C A T A C G T A G T C C G T A G A C T
p-value:1e-9
log p-value:-2.198e+01
Information Content per bp:1.730
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif5.51%
Number of Background Sequences with motif684.6
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets118.6 +/- 49.1bp
Average Position of motif in Background96.3 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATGAACATTG
ATGAATATTC
 C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGAACATTG
ATGMATATDC
 C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGAACATTG--
CTCATGAATATTCAT
 A C G T A C G T A C G T C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGAACATTG-------
-TGGACTTTGNNCTNTG
 C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGAACATTG------
-TGGACTTTGNNCTCN
 C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ATGAACATTG--
---CTCATTGTC
 C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G A C G T A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGAACATTG
AATATGCAAATT-
 A C G T A C G T A C G T C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGAACATTG
TTATGCAAATTA
 A C G T A C G T C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGAACATTG
TATGCAAAT--
 A C G T C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGAACATTG
ATATGCAAATT-
 A C G T A C G T C T G A C G A T C T A G G T C A C G T A G A T C C G T A A C G T C G A T A T C G
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T