Information for 5-CTTAGCAAAA (Motif 13)

T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A
Reverse Opposite:
A C G T G A C T A G C T C G A T A C T G G T A C C G A T T G C A C G T A A T C G
p-value:1e-8
log p-value:-2.036e+01
Information Content per bp:1.817
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.58%
Number of Background Sequences with motif441.8
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets104.0 +/- 59.6bp
Average Position of motif in Background101.9 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------CTTAGCAAAA------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTAGCAAAA-
SCCTAGCAACAG
 A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTTAGCAAAA
TACTTGGCAGA-
 A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTTAGCAAAA--
TACCATAGCAACGGT
 A C G T A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTTAGCAAAA--
CCGCATAGCAACGGA
 A C G T A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTAGCAAAA----
CAATTGCAAAAATAT
 A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTAGCAAAA-
GTCAGCANNTN
 T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTTAGCAAAA
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGCAAAA-
AAATTAGCATAAT
 A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU3F2/MA0787.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTTAGCAAAA
TAATTTGCATAA
 A C G T A C G T T A G C C G A T A C G T C G T A A C T G T G A C C G T A T C G A C T G A G T C A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A