Information for 7-AGCAGGCCAG (Motif 15)

C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
Reverse Opposite:
A G T C C G A T C A T G A C T G T A G C G A T C C G A T C T A G G A T C G A C T
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.689
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif12.20%
Number of Background Sequences with motif2576.2
Percentage of Background Sequences with motif5.10%
Average Position of motif in Targets116.2 +/- 49.0bp
Average Position of motif in Background100.3 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGCAGGCCAG-
---AGGCCTNG
 C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGCCAG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGCAGGCCAG------
--CAGGCCNNGGCCNN
 C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGCCAG
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGCCAG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGCAGGCCAG-
---AGGCCTAG
 C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G A C G T
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGGCCAG
DCTCAGCAGG----
 A C G T A C G T A C G T A C G T C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGCCAG
CACAGCAGGGGG-
 A C G T A C G T A C G T C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCAGGCCAG---
--AAGGCAAGTGT
 C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAGGCCAG
AGCGCGCC--
 C T G A C T A G G A T C G C T A C T A G A T C G T G A C G T A C C G T A T C A G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T