Information for 2-TCAGAGGGACAG (Motif 2)

A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G
Reverse Opposite:
G T A C A C G T A C T G A C G T A G T C A G T C G A T C A C G T A T G C C G A T A C T G T C G A
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.744
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.58%
Number of Background Sequences with motif337.5
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets120.6 +/- 56.4bp
Average Position of motif in Background100.3 +/- 63.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX3/MA1114.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCAGAGGGACAG----
GGGTGAGTGACAGGCGG
 A C G T A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCAGAGGGACAG-
-NTGATTGACAGN
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX2/MA1113.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAGAGGGACAG-
-GTGATTGACAGG
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T
A C G T T C A G C G A T C A T G C T G A A C G T C A G T A C T G C T G A A G T C C T G A A T C G T A C G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCAGAGGGACAG
BAGTCATANTGAAAG
 A C G T A C G T A C G T A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCAGAGGGACAG--
--TGAGTGACAGSC
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCAGAGGGACAG
GTAGGTCACTGGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCAGAGGGACAG-
-BTGABTGACAGS
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCAGAGGGACAG-
-GAAAGTGAAAGT
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T
A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCAGAGGGACAG
--CCAGGAACAG
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TCAGAGGGACAG-
---CAAGGHCANV
 A G C T T G A C C G T A T A C G C G T A C T A G C T A G A C T G T G C A T G A C C G T A C A T G A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G