Information for 3-CCTCCTTGCMCC (Motif 3)

A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C
Reverse Opposite:
C T A G C T A G A C T G A C T G A T G C C G T A C T G A A C T G A T C G C G T A C A T G C T A G
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.775
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif3.27%
Number of Background Sequences with motif147.9
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets117.7 +/- 44.5bp
Average Position of motif in Background97.4 +/- 66.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTCCTTGCMCC
-NNACTTGCCTT
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCTCCTTGCMCC---
-----TTGCAACATN
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTCCTTGCMCC
TGACCTTGACCT
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTCCTTGCMCC-
TGTTKCCTAGCAACM
 A C G T A C G T A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTCCTTGCMCC
NNAYTTCCTGHN---
 A C G T A C G T A C G T A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C
A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CCTCCTTGCMCC-
CCTTCCTTCCTTCCTTCC
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

PB0124.1_Gabpa_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCCTTGCMCC----
CCGTCTTCCCCCTCAC
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T A C G T A C G T A C G T
T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCTTGCMCC
BNTGDCCTTG----
 A C G T A C G T A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCTCCTTGCMCC--
----ATTGCATCAK
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCTCCTTGCMCC--
----ATTGCATCAT
 A G T C G T A C A C G T A T G C A G T C A G C T C G A T A T C G A G T C G T A C G A T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T