Information for 20-AAGACTTAACTA (Motif 31)

C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A
Reverse Opposite:
C G A T C T G A A C T G A C G T C G A T C G T A C T G A A C T G C G A T A T G C A G C T C G A T
p-value:1e-4
log p-value:-9.252e+00
Information Content per bp:1.783
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif196.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets108.5 +/- 68.4bp
Average Position of motif in Background103.4 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:AAGACTTAACTA--
----GTTAACTAGN
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PH0136.1_Phox2b/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAGACTTAACTA-----
CGGAATTAATTAATAGG
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
T A G C T C A G A C T G G C T A T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A G C T C T G A A T C G A T C G

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGACTTAACTA-----
AGCTGTTAACTAGCCGT
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAGACTTAACTA------
-GANGTTAACTAGTTTNN
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Lhx3/MA0135.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAGACTTAACTA---
--AAATTAATTAATC
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGACTTAACTA----
GATTAATTAATTAAGTC
 A C G T C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PB0081.1_Tcf1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGACTTAACTA----
ACTTAGTTAACTAAAAA
 A C G T C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AAGACTTAACTA
NMMNBAAAGGGTTAA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A A C G T A C G T A C G T

PH0153.1_Prop1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGACTTAACTA------
-CGAATTAATTAAGAAAC
 C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAGACTTAACTA-
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T C G T A C T G A A T C G C G T A G T A C A G C T A C G T C G T A C G T A T A G C A G C T C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C