Information for 11-GGACAAGAATAT (Motif 12)

A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
Reverse Opposite:
C G T A A G C T C G T A A C G T A C G T T G A C A G C T A C G T A C T G A C G T A T G C A T G C
p-value:1e-10
log p-value:-2.400e+01
Information Content per bp:1.884
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets116.3 +/- 56.9bp
Average Position of motif in Background105.2 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGACAAGAATAT---
----AAGGATATNTN
 A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGACAAGAATAT
TTTAGAACAATAAAAT
 A C G T A C G T A C G T A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGACAAGAATAT--
----ATGAATATTC
 A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGACAAGAATAT
TTAAGAACAATAAATT
 A C G T A C G T A C G T A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGACAAGAATAT
NNTNTCATGAATGT
 A C G T A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Mecom/MA0029.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGACAAGAATAT-
AAGATAAGATAACA
 A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGACAAGAATAT--
NNTNANAACAATTNNA
 A C G T A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGACAAGAATAT
-GACAATGNN--
 A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGACAAGAATAT--
CAAACAACAACACCT
 A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGACAAGAATAT
NNNTAACAATTATAN
 A C G T A C G T A C G T A T C G A T C G C G T A A G T C C G T A C T G A A C T G C G T A C G T A C G A T C T G A A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G