Information for 4-CCAATTGGAG (Motif 14)

T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
Reverse Opposite:
A T G C A G C T G T A C G A T C C G T A C T G A A C G T C A G T A C T G A T C G
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.692
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif7.77%
Number of Background Sequences with motif1570.2
Percentage of Background Sequences with motif3.14%
Average Position of motif in Targets108.5 +/- 50.5bp
Average Position of motif in Background98.2 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGAG--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGAG---
TGCGCTAATTAGTGGGA
 A C G T A C G T A C G T A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAATTGGAG
ACCACTTGAA-
 A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

PH0033.1_Gbx1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTGGAG--
TGCCACTAATTAGTGTA
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G A C G T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAATTGGAG
AGCCAATCGG--
 A C G T A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATTGGAG
CCAATTAA--
 T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATTGGAG
CCAATTAG--
 T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATTGGAG
CCAATTAA--
 T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTGGAG--
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

HOXA5/MA0158.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAATTGGAG
--AATTAGTG
 T A G C G T A C G T C A T G C A G A C T C G A T C T A G C A T G C T G A A T C G
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G