Information for 16-CTCATTTGTATT (Motif 19)

A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T
Reverse Opposite:
G T C A C G T A C A G T C G T A G T A C G T C A C G T A G T C A C G A T A T C G C G T A T C A G
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.778
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif379.8
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets113.1 +/- 51.7bp
Average Position of motif in Background103.5 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTCATTTGTATT
CTCATTTGCATW
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTTGTATT---
ANTCCTTTGTCTNNNN
 A C G T A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTCATTTGTATT
--CCTTTGTTTT
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTCATTTGTATT-
TTCATTTGCATAT
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU1F1/MA0784.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTCATTTGTATT--
CTAATTTGCATATT
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTTGTATT---
TNTAATTTGCATANNN
 A C G T A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU5F1/MA1115.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCATTTGTATT-
--NATTTGCATNN
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCATTTGTATT
BTVATTWGCATA
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

SOX15/MA1152.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCATTTGTATT
--CTATTGTTTT
 A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T
A C G T A C G T A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTTGTATT---
TNTAATTTGCATACNA
 A C G T A G T C C G A T T A G C C G T A A C G T C G A T A C G T C A T G C G A T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A