Information for 15-CGTAGTTGAA (Motif 26)

A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
Reverse Opposite:
A C G T A G C T G T A C G T C A C T G A A G T C A C G T C G T A A G T C A C T G
p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.887
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets79.6 +/- 57.4bp
Average Position of motif in Background96.1 +/- 44.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGTAGTTGAA---
TCCGTCGCTTAAAAG
 A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A A C G T A C G T A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0161.1_Rxra_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGTAGTTGAA---
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CGTAGTTGAA-
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CGTAGTTGAA--
GCACAYAGTAGGKCY
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

MYB/MA0100.3/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGTAGTTGAA
NNCAGTTGNN
 A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
C A T G C T G A A G T C T G C A A C T G C G A T G A C T T C A G T C A G C A G T

PB0131.1_Gmeb1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------CGTAGTTGAA
TGGGCGACGTCGTTAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A A C G T

GMEB2/MA0862.1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CGTAGTTGAA
TTACGTAA-----
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
A C G T A C G T C T G A A T G C A C T G A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGTAGTTGAA----
TGCGGAGTGGGACTGG
 A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CGTAGTTGAA
BGCACGTA------
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CGTAGTTGAA
-NTAATTGG-
 A G T C A C T G A C G T C G T A A C T G A G C T A C G T A C T G C T G A C G T A
A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T