Information for 21-GACATAGACCTA (Motif 29)

A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
Reverse Opposite:
A G C T C G T A A C T G A T C G A C G T A G T C A C G T C G T A A C G T A C T G A C G T A G T C
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.897
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 61.0bp
Average Position of motif in Background81.9 +/- 45.5bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GACATAGACCTA
TGACCTTGACCT-
 A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GACATAGACCTA
TGACCTTGACCT-
 A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GACATAGACCTA
NAGGTCANTGACCT-
 A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GACATAGACCTA
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GACATAGACCTA
GAGGTCATTGACCCC
 A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
T C A G T C G A C A T G C A T G A G C T A G T C T C G A C G A T A G C T T A C G T G C A G T A C G T A C A G T C A G T C

SOX10/MA0442.2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACATAGACCTA
AAAACAAAGAA---
 A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GACATAGACCTA
GCTGACCTTGAACTN
 A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

NR1A4::RXRA/MA1146.1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GACATAGACCTA
GAGGTCATTGACCTT
 A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
T C A G T C G A C T A G C A T G A C G T A G T C C T G A G C A T A G C T T C A G T G C A G T A C G T A C A G C T A G C T

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GACATAGACCTA
NATGACCTTGA----
 A C G T A C G T A C G T A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GACATAGACCTA------
----TTGACCTANTTATN
 A C T G G T C A A G T C G T C A A C G T C G T A A C T G C G T A A T G C G T A C A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A