Information for 4-CAGCCATC (Motif 35)

T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C
Reverse Opposite:
T A C G C T G A C G A T C T A G T A C G G T A C G A C T A C T G
p-value:1e-5
log p-value:-1.168e+01
Information Content per bp:1.594
Number of Target Sequences with motif226.0
Percentage of Target Sequences with motif28.79%
Number of Background Sequences with motif11073.8
Percentage of Background Sequences with motif22.16%
Average Position of motif in Targets100.3 +/- 54.0bp
Average Position of motif in Background99.9 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATC---
GCNGCCATCTTG
 A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATC
BCAGACWA-
 A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATC---
GCCGCCATCTTG
 A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATC-
GTCCGCCATTA
 A C G T A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGCCATC
CAGCC---
 T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGCCATC---
-GGCCATTAAC
 T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T A C G T A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCATC
CACAGN----
 A C G T A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATC--
GYCATCMATCAT
 A C G T A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATC-
YCATCMATCA
 A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CAGCCATC---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A C A T G A T G C G A T C G C T A G A C T A T G C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A