Information for 3-CTCATTGT (Motif 15)

A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T
Reverse Opposite:
C G T A G T A C G T C A C G T A A C G T A C T G C T G A A T C G
p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.818
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif28.21%
Number of Background Sequences with motif2048.6
Percentage of Background Sequences with motif4.37%
Average Position of motif in Targets101.4 +/- 59.9bp
Average Position of motif in Background101.0 +/- 69.7bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CTCATTGT-----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX13/MA1120.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CTCATTGT--
NNCCATTGTNN
 A C G T A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CTCATTGT-
CTCATTGTC
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CTCATTGT---
-CCATTGTTYB
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTCATTGT--
-CCATTGTTC
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTCATTGT---
-CCWTTGTYYB
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTCATTGT--
NCCATTGTTC
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CTCATTGT---
-CCATTGTTTT
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTCATTGT-
-CCWTTGTY
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTCATTGT--
NCCATTGTTY
 A T G C G A C T G T A C C G T A A C G T A C G T A C T G C G A T A C G T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T