Information for 6-GTCCAGHGGATD (Motif 6)

A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G
Reverse Opposite:
G A T C C G T A C G A T A G T C A G T C C G T A A G T C A C G T A C T G A T C G C T G A A G T C
p-value:1e-12
log p-value:-2.894e+01
Information Content per bp:1.794
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif17.95%
Number of Background Sequences with motif71.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets99.6 +/- 64.0bp
Average Position of motif in Background108.2 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTCCAGHGGATD-
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTCCAGHGGATD-
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTCCAGHGGATD-
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTCCAGHGGATD-
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GTCCAGHGGATD-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCCAGHGGATD
BTBRAGTGSN--
 A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTCCAGHGGATD
NTCAAGTGGN--
 A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GTCCAGHGGATD
-----GTGGAT-
 A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G
A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTCCAGHGGATD
NTGCCCANNGGTNA
 A C G T A C G T A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCCAGHGGATD--
---AAGAGGATTAG
 A C T G A G C T A T G C G T A C C G T A A C T G G A C T A C T G A C T G C G T A A C G T C A T G A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G