Information for 1-GAWTCGAHTCGA (Motif 1)

A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
Reverse Opposite:
A G C T T A G C T A C G T C G A C G A T C G A T A T G C A T C G G T C A C G A T C G A T T A G C
p-value:1e-110
log p-value:-2.537e+02
Information Content per bp:1.606
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif31.58%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets102.8 +/- 56.5bp
Average Position of motif in Background100.0 +/- 88.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)3.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAWTCGAHTCGA
HNRAATCAAT----
 A C G T A C G T A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

PAX7/MA0680.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAWTCGAHTCGA
TAATCGATTA--
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T A C G T

PAX3/MA0780.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAWTCGAHTCGA
TAATCGATTA--
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAWTCGAHTCGA
NTATYGATCH--
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T A C G T

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAWTCGAHTCGA
-TATCGATNAN-
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
A C G T A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A A C G T

Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAWTCGAHTCGA
TAAYCYAATCAA
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
G C A T T C G A C T G A G A T C A G T C G A T C G T C A G T C A A C G T A G T C C G T A C T G A

CUX1/MA0754.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAWTCGAHTCGA
NTATCGATTA--
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAWTCGAHTCGA
NATTCAAAT---
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAWTCGAHTCGA--
---TCCAATCCACA
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A A C G T A C G T
A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAWTCGAHTCGA
TAATCAATTA--
 A T C G G C T A G C T A C A G T T A G C T A C G G C T A G C T A A G C T A T G C A T C G C T G A
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T