Information for 6-TCGAGTTGAT (Motif 3)

A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
Reverse Opposite:
C G T A A C G T A T G C C T G A C G T A A G T C A C G T A G T C A C T G C G T A
p-value:1e-44
log p-value:-1.029e+02
Information Content per bp:1.936
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif11.00%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets117.2 +/- 70.3bp
Average Position of motif in Background109.1 +/- 83.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR/MA0693.2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCGAGTTGAT
-TGAGTTCA-
 A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
A C G T G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCGAGTTGAT--
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCGAGTTGAT--
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCGAGTTGAT--
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PB0105.1_Arid3a_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TCGAGTTGAT------
-NNATNTGATANNNNN
 A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

Esrra/MA0592.2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCGAGTTGAT
TTCAAGGTCAT
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCGAGTTGAT
NTCAAGTGG--
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCGAGTTGAT
BTBRAGTGSN-
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TCGAGTTGAT--
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCGAGTTGAT
TTRAGTGSYK
 A C G T A G T C A C T G C G T A A C T G A C G T A G C T A T C G G T C A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T