Information for 7-AAATTCTATT (Motif 12)

G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T
Reverse Opposite:
T C G A C G T A A G C T C G T A C T A G C G T A C G T A C G A T A C G T C G A T
p-value:1e-8
log p-value:-1.866e+01
Information Content per bp:1.836
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif4.31%
Number of Background Sequences with motif354.5
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets108.1 +/- 50.3bp
Average Position of motif in Background99.0 +/- 55.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AAATTCTATT-----
NTNAATTTTATTGNATT
 A C G T A C G T G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAATTCTATT-----
NNANTTTTATTGGNNN
 A C G T G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAATTCTATT-----
NNAATTTTATTGGNTN
 A C G T G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAATTCTATT--
TAATTNVATTAN
 G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAATTCTATT-
TAATTAAATTA
 G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAATTCTATT-----
TNAATTTTATTACCTN
 A C G T G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATTCTATT--
TAATYNRATTAR
 G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATTCTATT------
NAATTTTATTACCNNN
 G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATTCTATT
CACATTCCAT-
 A C G T G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T
G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAATTCTATT-
TAATTAAATTA
 G C T A G T C A C G T A A C G T A C G T G A T C A C G T T C G A C G A T A G C T A C G T
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A