Information for 11-TGTCTAAAGGGG (Motif 17)

A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
Reverse Opposite:
A G T C A G T C A G T C A T G C A C G T A C G T A G C T C G T A A C T G C G T A A G T C C G T A
p-value:1e-6
log p-value:-1.421e+01
Information Content per bp:1.906
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.6 +/- 38.1bp
Average Position of motif in Background138.3 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGTCTAAAGGGG
TGTCTAGACG--
 A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTCTAAAGGGG
TGTCTAGA----
 A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTCTAAAGGGG
TWGTCTGV-----
 A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTAAAGGGG
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTCTAAAGGGG
CTGTCTGG-----
 A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGTCTAAAGGGG
NTGTCAN------
 A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGTCTAAAGGGG
VBSYGTCTGG-----
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTCTAAAGGGG
GNCTATAAAAGG-
 A C G T A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGTCTAAAGGGG----
-GTATAAAAGGCGGGG
 A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGTCTAAAGGGG----
-GTATAAAAGGCGGGG
 A C G T A C T G A C G T A G T C A C G T C T G A C G T A C G T A A T C G C T A G C T A G A C T G A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G