Information for 1-GCCAAATCYKTC (Motif 2)

C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
Reverse Opposite:
A C T G C G T A G T A C C T A G C A T G C G T A A C G T A C G T C G A T A C T G T C A G A G T C
p-value:1e-10
log p-value:-2.360e+01
Information Content per bp:1.727
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif4.06%
Number of Background Sequences with motif218.1
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets64.8 +/- 45.8bp
Average Position of motif in Background96.7 +/- 63.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAAATCYKTC
CGTGCCAAG------
 A C G T A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCAAATCYKTC
GGTGCCAAGT-----
 A C G T A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCAAATCYKTC
--CAAATCACTG
 C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

GRHL2/MA1105.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCAAATCYKTC---
GACAAACCAGTTTTT
 C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C A C G T A C G T A C G T
C T A G G T C A T G A C G C T A C T G A C G T A T A G C G T A C C G T A A T C G G A C T G A C T G A C T C A G T C A G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCAAATCYKTC--
GCAAAACATTACTA
 C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAATCYKTC---
TGCCAAAATAAACANN
 A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAATCYKTC
NNTGCCAAGNN----
 A C G T A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCCAAATCYKTC
TTGCCAAG------
 A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:9
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GCCAAATCYKTC
TTTTCCCGCCAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------GCCAAATCYKTC
TTTCCCGCCAAA------
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G T A C C G T A C G T A G T C A G A C T G T A C G A T C C A T G A C G T A G T C
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T