Information for 17-GGATGGATGG (Motif 31)

A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
Reverse Opposite:
A G T C A G T C G T C A G A C T T G A C A G T C G T C A G C A T A G T C G T A C
p-value:1e-3
log p-value:-8.129e+00
Information Content per bp:1.876
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif5.58%
Number of Background Sequences with motif1183.9
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets112.5 +/- 44.2bp
Average Position of motif in Background96.8 +/- 77.9bp
Strand Bias (log2 ratio + to - strand density)3.1
Multiplicity (# of sites on avg that occur together)1.62
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGATGGATGG
TGATKGATGR
 A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGATGGATGG-
ATGATKGATGRC
 A C G T A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGATGGATGG------
GTATTGGGTGGGTAATT
 A C G T A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGATGGATGG-
TGATTTATGGC
 A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGATGGATGG--
TGATTRATGGCY
 A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GGATGGATGG
TTTGATTGATGN
 A C G T A C G T A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGATGGATGG
TGATTGATGA
 A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PB0098.1_Zfp410_1/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------GGATGGATGG
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GGATGGATGG
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGATGGATGG---
-YSTGGGTGGTCT
 A C T G A C T G C G T A C A G T C T A G A C T G C T G A A C G T C T A G C T A G A C G T A C G T A C G T
A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T