Information for 4-GCAGCAAGAA (Motif 11)

C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
Reverse Opposite:
A C G T A C G T T A G C G A C T G A C T A T C G A G T C C G A T T C A G A G T C
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.692
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif25.27%
Number of Background Sequences with motif7071.6
Percentage of Background Sequences with motif14.38%
Average Position of motif in Targets95.9 +/- 54.9bp
Average Position of motif in Background100.1 +/- 64.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAAGAA-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAAGAA-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAAGAA-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGCAAGAA
-CAGCC----
 C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAAGAA
CACAGN-----
 A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGCAAGAA
ACAGGAAGTG
 C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAAGAA
DCTCAGCAGG--
 A C G T A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAAGAA
NGAAGC-----
 A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAAGAA-
CACAGCAGGGGG
 A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCAAGAA-------
GAAGTANCACGAATNMRAGT
 A C G T A C G T A C G T C T A G A G T C C G T A A C T G T A G C C T G A C T G A A T C G T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T