Information for 10-YGGAGAGGCG (Motif 18)

A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G T C C G A T A G T C A C G T A T G C A G T C C T G A
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.883
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif50.0
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets66.4 +/- 46.1bp
Average Position of motif in Background95.5 +/- 46.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YGGAGAGGCG
BTBRAGTGSN-
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:YGGAGAGGCG-------
NAGANTGGCGGGGNGNA
 A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-YGGAGAGGCG
CTYRAGTGSY-
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-YGGAGAGGCG
CTTGAGTGGCT
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YGGAGAGGCG
TTGAGTGSTT
 A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YGGAGAGGCG
DGGGYGKGGC-
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T

KLF5/MA0599.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YGGAGAGGCG
GGGGNGGGGC-
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-YGGAGAGGCG----
GGGNGGGGGCGGGGC
 A C G T A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:YGGAGAGGCG----
------GGCGCGCT
 A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:YGGAGAGGCG
TTRAGTGSYK
 A G C T A C T G A T C G C G T A C T A G C G T A A C T G A C T G A G T C A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T