Information for 2-TTATRCAC (Motif 24)

A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
Reverse Opposite:
C T A G A G C T C T A G A G C T G C T A A C G T C G T A C G T A
p-value:1e-6
log p-value:-1.598e+01
Information Content per bp:1.789
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif19.22%
Number of Background Sequences with motif5382.5
Percentage of Background Sequences with motif10.95%
Average Position of motif in Targets106.9 +/- 54.8bp
Average Position of motif in Background101.6 +/- 63.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTATRCAC-----
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTATRCAC
TGAATTATGCAT
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTATRCAC-
RTTATGYAAB
 A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C A C G T
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTATRCAC
GHATATKCAT
 A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTATRCAC
GAATATTCAT
 A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTATRCAC
CATTAATTATTCAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTATRCAC---
ANATTTTTGCAANTN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.61
Offset:-9
Orientation:reverse strand
Alignment:---------TTATRCAC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.60
Offset:-9
Orientation:reverse strand
Alignment:---------TTATRCAC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTATRCAC---
SSAATCCACANN
 A C G T A C G T C G A T C G T A C G A T C T G A A G T C C T G A A G T C A C G T A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C