Information for 15-CACACAGGCTTA (Motif 25)

G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
Reverse Opposite:
G A C T T C G A C G T A C T A G A G T C G A T C C A G T T C A G A C G T C A T G C A G T A C T G
p-value:1e-6
log p-value:-1.557e+01
Information Content per bp:1.737
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif331.1
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets94.3 +/- 54.8bp
Average Position of motif in Background102.6 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CACACAGGCTTA-
-----NGGATTAN
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CACACAGGCTTA
--CACAGN----
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CACACAGGCTTA
----NGGGATTA
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACACAGGCTTA
AACAAAGG----
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACACAGGCTTA
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A C G T G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CACACAGGCTTA-
--AAGAGGATTAG
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CACACAGGCTTA--
------GGATTAGC
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CACACAGGCTTA
----CAAGCTT-
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CACACAGGCTTA--
-----GGGATTANN
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CACACAGGCTTA--
----VRGGATTARN
 G T A C G T C A G A T C G T C A A G T C G T C A C T A G A C T G G A T C C G A T A G C T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C