Information for 21-YGTCSTWTGTCR (Motif 35)

A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G
Reverse Opposite:
A G T C A C T G C T G A A G T C C G T A C G A T C G T A A T C G A C T G C G T A A T G C C T A G
p-value:1e-4
log p-value:-1.003e+01
Information Content per bp:1.868
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets110.1 +/- 48.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:YGTCSTWTGTCR
---CCTTTGTT-
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:YGTCSTWTGTCR----
ANTCCTTTGTCTNNNN
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:YGTCSTWTGTCR
---CCWTTGTY-
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:YGTCSTWTGTCR-
------NTGTCAN
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

NEUROG2/MA0669.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:YGTCSTWTGTCR
-GACATATGTT-
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:YGTCSTWTGTCR-
---CCTTTGTTTT
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SOX10/MA0442.2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YGTCSTWTGTCR-
--NNCTTTGTTNN
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T
A C G T A C G T A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-YGTCSTWTGTCR----
TNNTCCTTTGTTCTNNT
 A C G T A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.59
Offset:7
Orientation:forward strand
Alignment:YGTCSTWTGTCR---
-------TGTCANYT
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YGTCSTWTGTCR-
---CCWTTGTYYB
 A G T C A T C G A C G T A G T C A T G C A C G T C G T A A C G T A C T G A G C T A G T C C T A G A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G