Information for 2-ATCAATGGGA (Motif 8)

G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
Reverse Opposite:
A C G T T A G C G A T C G A T C G C T A A C G T C G A T A C T G C T G A C G A T
p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.671
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif11.88%
Number of Background Sequences with motif2254.8
Percentage of Background Sequences with motif4.59%
Average Position of motif in Targets110.9 +/- 55.4bp
Average Position of motif in Background97.5 +/- 63.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATCAATGGGA
GAACAATGG--
 A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----ATCAATGGGA---
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATCAATGGGA
VRAACAATGG--
 A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ATCAATGGGA
GAACAATGGN-
 A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATCAATGGGA----
CAATCACTGGCAGAAT
 A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A A C G T A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----ATCAATGGGA--
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATCAATGGGA
HNRAATCAAT----
 A C G T A C G T A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATCAATGGGA--
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C G T A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATCAATGGGA
AACAAAGG--
 G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATCAATGGGA
AAACAATGGCA
 A C G T G C T A G A C T T G A C G C T A T G C A C G A T C T A G C T A G A T C G T G C A
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A