Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 463)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 49174)	% of Background Sequences with Motif
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.286e+00	0.7969	79.0	17.06%	6063.2	12.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-6.160e+00	0.7969	36.0	7.78%	2286.7	4.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.075e+00	0.7969	91.0	19.65%	7233.4	14.71%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.568e+00	0.7969	104.0	22.46%	8607.4	17.51%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-4.876e+00	0.7969	80.0	17.28%	6503.7	13.23%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-4.835e+00	0.7969	15.0	3.24%	778.9	1.58%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-4.570e+00	0.7969	44.0	9.50%	3244.6	6.60%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.529e+00	0.7969	34.0	7.34%	2369.7	4.82%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-4.496e+00	0.7969	45.0	9.72%	3349.2	6.81%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.486e+00	0.7969	42.0	9.07%	3082.7	6.27%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.051e+00	0.7969	237.0	51.19%	22704.1	46.18%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-4.029e+00	0.7969	22.0	4.75%	1425.7	2.90%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.996e+00	0.7969	58.0	12.53%	4662.7	9.48%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-1	-3.849e+00	0.7969	49.0	10.58%	3860.5	7.85%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-3.724e+00	0.7969	43.0	9.29%	3336.2	6.79%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-3.688e+00	0.7969	4.0	0.86%	116.1	0.24%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.678e+00	0.7969	51.0	11.02%	4089.9	8.32%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.661e+00	0.7969	9.0	1.94%	441.4	0.90%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-3.657e+00	0.7969	12.0	2.59%	666.0	1.35%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.644e+00	0.7969	137.0	29.59%	12538.8	25.51%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-3.620e+00	0.7969	127.0	27.43%	11538.3	23.47%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.510e+00	0.7969	68.0	14.69%	5752.2	11.70%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-3.418e+00	0.7969	7.0	1.51%	318.2	0.65%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.404e+00	0.7969	7.0	1.51%	319.9	0.65%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.305e+00	0.7969	27.0	5.83%	1978.0	4.02%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.300e+00	0.7969	109.0	23.54%	9862.5	20.06%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-3.219e+00	0.7969	34.0	7.34%	2627.2	5.34%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.181e+00	0.7969	25.0	5.40%	1823.6	3.71%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.167e+00	0.7969	12.0	2.59%	718.3	1.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.093e+00	0.7969	16.0	3.46%	1057.7	2.15%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.066e+00	0.7969	83.0	17.93%	7369.4	14.99%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.021e+00	0.7969	13.0	2.81%	817.7	1.66%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.020e+00	0.7969	77.0	16.63%	6795.3	13.82%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.020e+00	0.7969	24.0	5.18%	1765.1	3.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.006e+00	0.7969	5.0	1.08%	209.8	0.43%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.990e+00	0.7969	13.0	2.81%	821.0	1.67%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.990e+00	0.7969	40.0	8.64%	3240.0	6.59%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-2.781e+00	0.7969	7.0	1.51%	368.5	0.75%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-2.724e+00	0.7969	175.0	37.80%	16884.5	34.35%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-2.703e+00	0.7969	7.0	1.51%	375.9	0.76%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.694e+00	0.7969	26.0	5.62%	2013.0	4.09%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.684e+00	0.7969	32.0	6.91%	2570.0	5.23%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.680e+00	0.7969	18.0	3.89%	1296.4	2.64%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.631e+00	0.7969	10.0	2.16%	620.3	1.26%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-2.610e+00	0.7969	4.0	0.86%	166.2	0.34%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.593e+00	0.7969	34.0	7.34%	2781.7	5.66%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.586e+00	0.7969	29.0	6.26%	2315.8	4.71%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.578e+00	0.7969	2.0	0.43%	48.7	0.10%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.546e+00	0.7969	83.0	17.93%	7580.5	15.42%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.538e+00	0.7969	60.0	12.96%	5304.9	10.79%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.464e+00	0.7969	40.0	8.64%	3388.7	6.89%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.369e+00	0.7969	25.0	5.40%	1996.9	4.06%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.334e+00	0.7969	54.0	11.66%	4791.4	9.75%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.334e+00	0.7969	52.0	11.23%	4595.2	9.35%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.331e+00	0.7969	39.0	8.42%	3333.5	6.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.309e+00	0.7969	52.0	11.23%	4604.4	9.37%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.281e+00	0.7969	30.0	6.48%	2488.2	5.06%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.270e+00	0.7969	7.0	1.51%	418.4	0.85%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.252e+00	0.7969	148.0	31.97%	14356.9	29.20%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.233e+00	0.7969	8.0	1.73%	504.1	1.03%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-2.225e+00	0.7969	55.0	11.88%	4931.9	10.03%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.182e+00	0.7969	5.0	1.08%	269.1	0.55%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.168e+00	0.7969	94.0	20.30%	8866.3	18.04%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-2.163e+00	0.7969	52.0	11.23%	4659.2	9.48%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.158e+00	0.7969	32.0	6.91%	2714.0	5.52%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.150e+00	0.7969	159.0	34.34%	15559.7	31.65%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.149e+00	0.7969	38.0	8.21%	3295.1	6.70%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-2.146e+00	0.7969	27.0	5.83%	2241.6	4.56%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-2.133e+00	0.7969	9.0	1.94%	601.9	1.22%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.102e+00	0.7969	70.0	15.12%	6476.5	13.17%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.063e+00	0.7969	44.0	9.50%	3910.2	7.95%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.039e+00	0.7969	4.0	0.86%	205.1	0.42%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.998e+00	0.7969	28.0	6.05%	2378.3	4.84%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.958e+00	0.8163	34.0	7.34%	2970.4	6.04%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.952e+00	0.8163	26.0	5.62%	2200.0	4.48%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.944e+00	0.8163	21.0	4.54%	1728.0	3.51%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.927e+00	0.8163	45.0	9.72%	4060.7	8.26%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.918e+00	0.8163	13.0	2.81%	990.7	2.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.914e+00	0.8163	46.0	9.94%	4165.0	8.47%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.899e+00	0.8163	19.0	4.10%	1550.2	3.15%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.894e+00	0.8163	44.0	9.50%	3974.1	8.08%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.893e+00	0.8163	11.0	2.38%	814.3	1.66%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.869e+00	0.8163	5.0	1.08%	299.7	0.61%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.849e+00	0.8163	22.0	4.75%	1847.3	3.76%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.825e+00	0.8163	32.0	6.91%	2820.9	5.74%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.780e+00	0.8396	91.0	19.65%	8771.3	17.84%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.777e+00	0.8396	82.0	17.71%	7853.2	15.97%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.777e+00	0.8396	11.0	2.38%	835.8	1.70%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.755e+00	0.8396	27.0	5.83%	2356.2	4.79%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.754e+00	0.8396	49.0	10.58%	4529.7	9.21%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.752e+00	0.8396	67.0	14.47%	6342.7	12.90%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.746e+00	0.8396	9.0	1.94%	660.4	1.34%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.690e+00	0.8495	2.0	0.43%	83.5	0.17%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.682e+00	0.8495	66.0	14.25%	6277.8	12.77%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.669e+00	0.8495	4.0	0.86%	238.7	0.49%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.666e+00	0.8495	12.0	2.59%	949.9	1.93%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.660e+00	0.8495	19.0	4.10%	1612.4	3.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.654e+00	0.8495	35.0	7.56%	3177.7	6.46%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.647e+00	0.8495	197.0	42.55%	19891.8	40.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.598e+00	0.8658	72.0	15.55%	6933.4	14.10%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.590e+00	0.8658	53.0	11.45%	5007.9	10.19%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.534e+00	0.9046	21.0	4.54%	1842.7	3.75%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.530e+00	0.9046	22.0	4.75%	1941.8	3.95%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.525e+00	0.9046	79.0	17.06%	7692.6	15.65%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.522e+00	0.9046	8.0	1.73%	608.6	1.24%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.499e+00	0.9046	21.0	4.54%	1853.7	3.77%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.477e+00	0.9133	11.0	2.38%	896.6	1.82%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.477e+00	0.9133	10.0	2.16%	802.7	1.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.467e+00	0.9133	106.0	22.89%	10516.6	21.39%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.456e+00	0.9133	4.0	0.86%	261.8	0.53%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.454e+00	0.9133	12.0	2.59%	996.5	2.03%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.434e+00	0.9133	8.0	1.73%	624.9	1.27%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.416e+00	0.9194	7.0	1.51%	535.9	1.09%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.404e+00	0.9220	39.0	8.42%	3682.1	7.49%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.393e+00	0.9245	5.0	1.08%	357.8	0.73%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.390e+00	0.9245	26.0	5.62%	2384.6	4.85%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.384e+00	0.9245	120.0	25.92%	12032.3	24.48%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.376e+00	0.9245	39.0	8.42%	3695.8	7.52%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.370e+00	0.9245	25.0	5.40%	2292.3	4.66%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.370e+00	0.9245	97.0	20.95%	9652.7	19.64%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.342e+00	0.9245	11.0	2.38%	927.4	1.89%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.334e+00	0.9245	52.0	11.23%	5038.5	10.25%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.332e+00	0.9245	49.0	10.58%	4733.2	9.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.325e+00	0.9245	44.0	9.50%	4227.1	8.60%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.323e+00	0.9245	3.0	0.65%	190.7	0.39%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.320e+00	0.9245	1.0	0.22%	33.1	0.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.316e+00	0.9245	7.0	1.51%	553.8	1.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.316e+00	0.9245	7.0	1.51%	553.8	1.13%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.313e+00	0.9245	3.0	0.65%	191.5	0.39%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.311e+00	0.9245	5.0	1.08%	369.7	0.75%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.307e+00	0.9245	206.0	44.49%	21130.7	42.98%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.302e+00	0.9245	4.0	0.86%	280.5	0.57%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.297e+00	0.9245	28.0	6.05%	2621.1	5.33%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.279e+00	0.9245	7.0	1.51%	560.4	1.14%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.263e+00	0.9245	28.0	6.05%	2635.7	5.36%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.262e+00	0.9245	11.0	2.38%	947.7	1.93%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.261e+00	0.9245	18.0	3.89%	1635.3	3.33%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.250e+00	0.9245	19.0	4.10%	1738.9	3.54%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.221e+00	0.9245	23.0	4.97%	2149.1	4.37%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.218e+00	0.9245	7.0	1.51%	572.3	1.16%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.217e+00	0.9245	15.0	3.24%	1352.6	2.75%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.215e+00	0.9245	61.0	13.17%	6033.6	12.27%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.211e+00	0.9245	112.0	24.19%	11335.3	23.06%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.207e+00	0.9245	12.0	2.59%	1059.5	2.16%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.204e+00	0.9245	12.0	2.59%	1060.0	2.16%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.188e+00	0.9245	48.0	10.37%	4711.7	9.58%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.186e+00	0.9245	209.0	45.14%	21563.5	43.86%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.185e+00	0.9245	36.0	7.78%	3483.9	7.09%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.181e+00	0.9245	13.0	2.81%	1166.0	2.37%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.164e+00	0.9245	22.0	4.75%	2071.9	4.21%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.162e+00	0.9245	72.0	15.55%	7207.6	14.66%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.160e+00	0.9245	29.0	6.26%	2782.7	5.66%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.147e+00	0.9245	77.0	16.63%	7737.2	15.74%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.140e+00	0.9245	14.0	3.02%	1277.9	2.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.134e+00	0.9245	98.0	21.17%	9936.1	20.21%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.128e+00	0.9245	99.0	21.38%	10045.1	20.43%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.120e+00	0.9245	41.0	8.86%	4031.0	8.20%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.090e+00	0.9245	158.0	34.13%	16273.3	33.10%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.087e+00	0.9245	12.0	2.59%	1094.6	2.23%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.083e+00	0.9245	57.0	12.31%	5706.4	11.61%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.081e+00	0.9245	68.0	14.69%	6850.8	13.94%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.060e+00	0.9245	20.0	4.32%	1910.1	3.89%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.047e+00	0.9245	46.0	9.94%	4589.8	9.34%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.029e+00	0.9330	35.0	7.56%	3463.6	7.05%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.028e+00	0.9330	86.0	18.57%	8769.3	17.84%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.026e+00	0.9330	81.0	17.49%	8248.4	16.78%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.013e+00	0.9330	28.0	6.05%	2750.7	5.60%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-9.983e-01	0.9389	20.0	4.32%	1936.4	3.94%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-9.945e-01	0.9389	43.0	9.29%	4311.2	8.77%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-9.757e-01	0.9489	90.0	19.44%	9233.3	18.78%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.729e-01	0.9489	11.0	2.38%	1029.3	2.09%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.693e-01	0.9489	34.0	7.34%	3393.5	6.90%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-9.649e-01	0.9489	47.0	10.15%	4747.0	9.66%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-9.569e-01	0.9489	79.0	17.06%	8096.6	16.47%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.484e-01	0.9489	1.0	0.22%	52.6	0.11%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.468e-01	0.9489	34.0	7.34%	3406.3	6.93%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-9.466e-01	0.9489	31.0	6.70%	3095.4	6.30%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.412e-01	0.9489	5.0	1.08%	435.3	0.89%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.192e-01	0.9536	1.0	0.22%	54.1	0.11%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.175e-01	0.9536	8.0	1.73%	742.3	1.51%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-9.012e-01	0.9602	92.0	19.87%	9511.1	19.35%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.011e-01	0.9602	3.0	0.65%	245.3	0.50%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-8.927e-01	0.9602	49.0	10.58%	5005.2	10.18%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-8.866e-01	0.9602	105.0	22.68%	10894.0	22.16%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.413e-01	0.9975	24.0	5.18%	2425.4	4.93%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-8.406e-01	0.9975	78.0	16.85%	8094.2	16.46%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-8.302e-01	0.9978	36.0	7.78%	3687.5	7.50%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.294e-01	0.9978	41.0	8.86%	4212.3	8.57%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.105e-01	1.0000	13.0	2.81%	1293.7	2.63%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.068e-01	1.0000	40.0	8.64%	4123.9	8.39%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.053e-01	1.0000	12.0	2.59%	1191.4	2.42%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.052e-01	1.0000	11.0	2.38%	1087.4	2.21%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.032e-01	1.0000	33.0	7.13%	3390.9	6.90%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.031e-01	1.0000	67.0	14.47%	6969.6	14.18%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-7.966e-01	1.0000	47.0	10.15%	4867.7	9.90%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-7.961e-01	1.0000	36.0	7.78%	3710.3	7.55%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-7.936e-01	1.0000	20.0	4.32%	2032.4	4.13%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.864e-01	1.0000	3.0	0.65%	265.7	0.54%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.786e-01	1.0000	18.0	3.89%	1830.6	3.72%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.784e-01	1.0000	25.0	5.40%	2565.9	5.22%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-7.782e-01	1.0000	46.0	9.94%	4776.3	9.72%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.764e-01	1.0000	11.0	2.38%	1098.9	2.24%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.696e-01	1.0000	32.0	6.91%	3307.1	6.73%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-7.674e-01	1.0000	13.0	2.81%	1311.1	2.67%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-7.648e-01	1.0000	45.0	9.72%	4681.3	9.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-7.592e-01	1.0000	27.0	5.83%	2787.8	5.67%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.589e-01	1.0000	1.0	0.22%	67.6	0.14%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.586e-01	1.0000	52.0	11.23%	5425.4	11.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.558e-01	1.0000	2.0	0.43%	168.1	0.34%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-7.511e-01	1.0000	53.0	11.45%	5537.4	11.26%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.466e-01	1.0000	13.0	2.81%	1320.1	2.69%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.438e-01	1.0000	47.0	10.15%	4909.4	9.99%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.428e-01	1.0000	2.0	0.43%	170.6	0.35%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.397e-01	1.0000	13.0	2.81%	1323.2	2.69%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.351e-01	1.0000	3.0	0.65%	275.3	0.56%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-7.334e-01	1.0000	25.0	5.40%	2592.6	5.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.317e-01	1.0000	31.0	6.70%	3228.0	6.57%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-7.296e-01	1.0000	26.0	5.62%	2700.1	5.49%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.209e-01	1.0000	20.0	4.32%	2071.3	4.21%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-7.202e-01	1.0000	10.0	2.16%	1015.3	2.07%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.154e-01	1.0000	53.0	11.45%	5568.1	11.33%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.131e-01	1.0000	5.0	1.08%	490.2	1.00%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-7.092e-01	1.0000	99.0	21.38%	10450.2	21.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.076e-01	1.0000	10.0	2.16%	1020.9	2.08%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.044e-01	1.0000	12.0	2.59%	1233.5	2.51%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.994e-01	1.0000	46.0	9.94%	4840.7	9.85%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-6.922e-01	1.0000	83.0	17.93%	8772.3	17.84%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.849e-01	1.0000	9.0	1.94%	923.9	1.88%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.661e-01	1.0000	7.0	1.51%	717.2	1.46%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.604e-01	1.0000	20.0	4.32%	2106.4	4.28%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.599e-01	1.0000	29.0	6.26%	3065.4	6.24%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.535e-01	1.0000	2.0	0.43%	185.2	0.38%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.419e-01	1.0000	8.0	1.73%	833.9	1.70%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.296e-01	1.0000	126.0	27.21%	13417.8	27.29%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.287e-01	1.0000	44.0	9.50%	4689.5	9.54%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-6.225e-01	1.0000	95.0	20.52%	10129.5	20.61%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-6.198e-01	1.0000	34.0	7.34%	3629.2	7.38%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-6.135e-01	1.0000	26.0	5.62%	2778.1	5.65%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.131e-01	1.0000	4.0	0.86%	411.2	0.84%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.998e-01	1.0000	5.0	1.08%	524.6	1.07%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.856e-01	1.0000	4.0	0.86%	419.4	0.85%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.854e-01	1.0000	43.0	9.29%	4622.6	9.40%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-5.787e-01	1.0000	5.0	1.08%	531.2	1.08%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.761e-01	1.0000	22.0	4.75%	2375.4	4.83%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.735e-01	1.0000	12.0	2.59%	1296.6	2.64%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-5.587e-01	1.0000	58.0	12.53%	6256.4	12.73%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.566e-01	1.0000	15.0	3.24%	1631.1	3.32%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.457e-01	1.0000	67.0	14.47%	7235.5	14.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.436e-01	1.0000	9.0	1.94%	984.9	2.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.403e-01	1.0000	4.0	0.86%	433.6	0.88%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.347e-01	1.0000	7.0	1.51%	768.9	1.56%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-5.301e-01	1.0000	67.0	14.47%	7254.3	14.76%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.169e-01	1.0000	23.0	4.97%	2527.1	5.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.122e-01	1.0000	16.0	3.46%	1768.6	3.60%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.120e-01	1.0000	1.0	0.22%	97.5	0.20%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.024e-01	1.0000	40.0	8.64%	4381.5	8.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.944e-01	1.0000	18.0	3.89%	1999.4	4.07%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.908e-01	1.0000	36.0	7.78%	3960.5	8.06%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.899e-01	1.0000	4.0	0.86%	450.1	0.92%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.899e-01	1.0000	4.0	0.86%	450.1	0.92%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.841e-01	1.0000	68.0	14.69%	7420.9	15.10%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.796e-01	1.0000	78.0	16.85%	8501.9	17.29%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.791e-01	1.0000	31.0	6.70%	3429.5	6.98%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.782e-01	1.0000	14.0	3.02%	1571.4	3.20%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-4.663e-01	1.0000	3.0	0.65%	343.1	0.70%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-4.658e-01	1.0000	24.0	5.18%	2678.4	5.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.565e-01	1.0000	110.0	23.76%	11969.1	24.35%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.492e-01	1.0000	23.0	4.97%	2583.7	5.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.351e-01	1.0000	78.0	16.85%	8566.2	17.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.309e-01	1.0000	39.0	8.42%	4350.7	8.85%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-4.231e-01	1.0000	16.0	3.46%	1832.6	3.73%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-4.181e-01	1.0000	29.0	6.26%	3271.7	6.66%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.178e-01	1.0000	5.0	1.08%	595.0	1.21%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.166e-01	1.0000	4.0	0.86%	478.7	0.97%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.092e-01	1.0000	5.0	1.08%	598.1	1.22%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.081e-01	1.0000	3.0	0.65%	363.5	0.74%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.079e-01	1.0000	2.0	0.43%	242.2	0.49%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-4.003e-01	1.0000	54.0	11.66%	6021.0	12.25%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.884e-01	1.0000	19.0	4.10%	2195.6	4.47%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.847e-01	1.0000	40.0	8.64%	4515.6	9.19%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.669e-01	1.0000	3.0	0.65%	379.4	0.77%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.664e-01	1.0000	34.0	7.34%	3879.8	7.89%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.663e-01	1.0000	12.0	2.59%	1427.1	2.90%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-3.622e-01	1.0000	23.0	4.97%	2666.6	5.42%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.599e-01	1.0000	11.0	2.38%	1318.5	2.68%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.501e-01	1.0000	3.0	0.65%	386.0	0.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.484e-01	1.0000	15.0	3.24%	1782.7	3.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.467e-01	1.0000	118.0	25.49%	13031.1	26.51%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.435e-01	1.0000	1.0	0.22%	131.1	0.27%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.431e-01	1.0000	52.0	11.23%	5888.0	11.98%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.393e-01	1.0000	92.0	19.87%	10242.7	20.84%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.365e-01	1.0000	10.0	2.16%	1222.0	2.49%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.291e-01	1.0000	27.0	5.83%	3149.4	6.41%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.243e-01	1.0000	87.0	18.79%	9730.9	19.79%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.231e-01	1.0000	33.0	7.13%	3824.6	7.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.190e-01	1.0000	18.0	3.89%	2150.6	4.37%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.160e-01	1.0000	5.0	1.08%	647.9	1.32%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-3.153e-01	1.0000	38.0	8.21%	4389.4	8.93%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.067e-01	1.0000	9.0	1.94%	1128.2	2.30%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.005e-01	1.0000	61.0	13.17%	6944.5	14.13%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.975e-01	1.0000	11.0	2.38%	1369.2	2.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.956e-01	1.0000	2.0	0.43%	282.5	0.57%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-2.832e-01	1.0000	20.0	4.32%	2417.7	4.92%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.763e-01	1.0000	31.0	6.70%	3667.4	7.46%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.673e-01	1.0000	7.0	1.51%	922.0	1.88%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.666e-01	1.0000	42.0	9.07%	4910.6	9.99%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.657e-01	1.0000	10.0	2.16%	1281.9	2.61%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.605e-01	1.0000	5.0	1.08%	683.2	1.39%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.599e-01	1.0000	7.0	1.51%	928.4	1.89%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.596e-01	1.0000	16.0	3.46%	1987.4	4.04%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.565e-01	1.0000	37.0	7.99%	4370.8	8.89%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.554e-01	1.0000	9.0	1.94%	1172.5	2.39%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.530e-01	1.0000	15.0	3.24%	1879.3	3.82%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.497e-01	1.0000	42.0	9.07%	4940.9	10.05%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.489e-01	1.0000	3.0	0.65%	437.8	0.89%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.443e-01	1.0000	135.0	29.16%	15109.4	30.73%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.357e-01	1.0000	14.0	3.02%	1783.8	3.63%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.327e-01	1.0000	3.0	0.65%	447.3	0.91%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-2.318e-01	1.0000	60.0	12.96%	6973.9	14.19%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.286e-01	1.0000	6.0	1.30%	832.6	1.69%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.225e-01	1.0000	35.0	7.56%	4206.7	8.56%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.208e-01	1.0000	108.0	23.33%	12255.8	24.93%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.202e-01	1.0000	9.0	1.94%	1207.4	2.46%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.087e-01	1.0000	6.0	1.30%	850.4	1.73%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.065e-01	1.0000	2.0	0.43%	327.8	0.67%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.057e-01	1.0000	10.0	2.16%	1344.2	2.73%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.958e-01	1.0000	1.0	0.22%	183.9	0.37%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.958e-01	1.0000	27.0	5.83%	3347.2	6.81%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.921e-01	1.0000	56.0	12.10%	6624.9	13.48%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.894e-01	1.0000	35.0	7.56%	4272.8	8.69%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.889e-01	1.0000	25.0	5.40%	3130.1	6.37%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.861e-01	1.0000	98.0	21.17%	11270.5	22.93%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.840e-01	1.0000	1.0	0.22%	189.3	0.39%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.785e-01	1.0000	37.0	7.99%	4523.3	9.20%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.747e-01	1.0000	178.0	38.44%	19961.9	40.61%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.745e-01	1.0000	57.0	12.31%	6782.4	13.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.718e-01	1.0000	31.0	6.70%	3855.0	7.84%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.705e-01	1.0000	40.0	8.64%	4882.2	9.93%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.698e-01	1.0000	5.0	1.08%	761.1	1.55%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.645e-01	1.0000	9.0	1.94%	1274.0	2.59%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.627e-01	1.0000	2.0	0.43%	357.7	0.73%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.613e-01	1.0000	21.0	4.54%	2718.6	5.53%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.592e-01	1.0000	3.0	0.65%	503.1	1.02%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.588e-01	1.0000	25.0	5.40%	3190.6	6.49%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.492e-01	1.0000	9.0	1.94%	1296.2	2.64%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.409e-01	1.0000	1.0	0.22%	215.4	0.44%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.397e-01	1.0000	23.0	4.97%	2999.3	6.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.372e-01	1.0000	5.0	1.08%	799.8	1.63%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.349e-01	1.0000	82.0	17.71%	9690.5	19.71%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.339e-01	1.0000	1.0	0.22%	220.4	0.45%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.260e-01	1.0000	32.0	6.91%	4084.7	8.31%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.247e-01	1.0000	13.0	2.81%	1834.9	3.73%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.200e-01	1.0000	41.0	8.86%	5139.9	10.46%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.159e-01	1.0000	11.0	2.38%	1604.2	3.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.147e-01	1.0000	2.0	0.43%	401.6	0.82%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.142e-01	1.0000	7.0	1.51%	1097.2	2.23%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.133e-01	1.0000	57.0	12.31%	6982.1	14.20%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.119e-01	1.0000	15.0	3.24%	2107.1	4.29%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.023e-01	1.0000	74.0	15.98%	8939.1	18.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.021e-01	1.0000	1.0	0.22%	247.9	0.50%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.005e-01	1.0000	23.0	4.97%	3103.4	6.31%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.381e-02	1.0000	4.0	0.86%	726.0	1.48%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-9.366e-02	1.0000	20.0	4.32%	2764.5	5.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.280e-02	1.0000	12.0	2.59%	1782.9	3.63%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.238e-02	1.0000	3.0	0.65%	582.6	1.19%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.184e-02	1.0000	13.0	2.81%	1910.5	3.89%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.975e-02	1.0000	1.0	0.22%	260.6	0.53%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-8.795e-02	1.0000	146.0	31.53%	16939.2	34.46%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-8.586e-02	1.0000	4.0	0.86%	739.2	1.50%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.221e-02	1.0000	52.0	11.23%	6551.6	13.33%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.157e-02	1.0000	11.0	2.38%	1685.2	3.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.805e-02	1.0000	4.0	0.86%	755.0	1.54%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.062e-02	1.0000	74.0	15.98%	9112.2	18.54%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-6.570e-02	1.0000	34.0	7.34%	4546.8	9.25%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.552e-02	1.0000	11.0	2.38%	1735.0	3.53%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.357e-02	1.0000	4.0	0.86%	786.5	1.60%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.176e-02	1.0000	1.0	0.22%	298.8	0.61%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.951e-02	1.0000	26.0	5.62%	3623.0	7.37%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-5.264e-02	1.0000	29.0	6.26%	4022.7	8.18%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-4.649e-02	1.0000	43.0	9.29%	5725.1	11.65%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.471e-02	1.0000	5.0	1.08%	989.4	2.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.249e-02	1.0000	2.0	0.43%	525.3	1.07%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-4.085e-02	1.0000	31.0	6.70%	4341.3	8.83%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.027e-02	1.0000	5.0	1.08%	1006.7	2.05%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.732e-02	1.0000	2.0	0.43%	541.7	1.10%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.647e-02	1.0000	5.0	1.08%	1022.7	2.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.407e-02	1.0000	4.0	0.86%	881.5	1.79%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.286e-02	1.0000	95.0	20.52%	11815.0	24.03%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.076e-02	1.0000	13.0	2.81%	2162.1	4.40%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.065e-02	1.0000	6.0	1.30%	1198.7	2.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.804e-02	1.0000	22.0	4.75%	3341.7	6.80%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.603e-02	1.0000	25.0	5.40%	3736.8	7.60%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.246e-02	1.0000	14.0	3.02%	2363.4	4.81%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.076e-02	1.0000	8.0	1.73%	1555.6	3.16%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.071e-02	1.0000	19.0	4.10%	3035.4	6.17%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.511e-02	1.0000	27.0	5.83%	4131.1	8.40%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.072e-02	1.0000	133.0	28.73%	16526.1	33.62%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.055e-02	1.0000	6.0	1.30%	1372.3	2.79%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-9.676e-03	1.0000	20.0	4.32%	3343.7	6.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.842e-03	1.0000	37.0	7.99%	5520.7	11.23%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-8.819e-03	1.0000	93.0	20.09%	12115.2	24.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.391e-03	1.0000	12.0	2.59%	2315.5	4.71%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.371e-03	1.0000	25.0	5.40%	4132.5	8.41%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.647e-03	1.0000	22.0	4.75%	3772.3	7.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.509e-03	1.0000	110.0	23.76%	14379.2	29.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.120e-03	1.0000	1.0	0.22%	609.1	1.24%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.090e-03	1.0000	189.0	40.82%	23272.0	47.34%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.040e-03	1.0000	29.0	6.26%	5029.4	10.23%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-6.390e-04	1.0000	71.0	15.33%	10386.0	21.13%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.790e-04	1.0000	60.0	12.96%	9272.7	18.86%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.770e-04	1.0000	106.0	22.89%	14730.1	29.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.500e-04	1.0000	15.0	3.24%	3446.6	7.01%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.800e-05	1.0000	13.0	2.81%	3268.2	6.65%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.600e-05	1.0000	1.0	0.22%	1156.6	2.35%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	269.0	0.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	9.7	0.02%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	67.1	0.14%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	21.7	0.04%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	135.6	0.28%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	52.1	0.11%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	34.8	0.07%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	100.0	0.20%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	66.5	0.14%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	38.5	0.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	25.9	0.05%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	215.9	0.44%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	120.1	0.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	26.5	0.05%