Information for 1-GAAGGAGCTT (Motif 3)

A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T
Reverse Opposite:
C G T A C G T A A T C G A T G C A C G T T G A C A G T C A G C T A C G T A T G C
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.845
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif12.05%
Number of Background Sequences with motif972.2
Percentage of Background Sequences with motif1.99%
Average Position of motif in Targets87.5 +/- 46.7bp
Average Position of motif in Background104.4 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GAAGGAGCTT
--CGGAGC--
 A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGAGCTT
NGAAGC-----
 A C G T A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAAGGAGCTT
AGGAAACAGCTG
 A C G T A C G T A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

ASCL1/MA1100.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAGGAGCTT---
GCAGCAGCTGGCG
 A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T A C G T
T A C G T A G C C T G A T C A G T A G C C G T A A T C G T A G C A C G T A T C G A T C G A T G C T A C G

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAAGGAGCTT-
----AAGCTTG
 A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAGGAGCTT--
-AAGAGGATTAG
 A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAAGGAGCTT--
NNNTTAGGTAGCNTNT
 A C G T A C G T A C G T A C G T A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAAGGAGCTT--
-AAGGATATNTN
 A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAAGGAGCTT--
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAAGGAGCTT--
GACGATAATGAGCTTGC
 A C G T A C G T A C G T A C G T A C G T A T C G G T C A C T G A A C T G A C T G C G T A A T C G A T G C A C G T G C A T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C