Information for 3-GACAAATTCA (Motif 6)

C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C T G A A C G T A C G T A C G T C T A G A C G T A G T C
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.843
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif7.23%
Number of Background Sequences with motif301.9
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets99.8 +/- 56.2bp
Average Position of motif in Background98.9 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GACAAATTCA----
GGACTGAATTCATGCC
 A C G T A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GACAAATTCA------
AATCAATTCAATAATT
 C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GACAAATTCA-------
---ACATTCATGACACG
 C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GACAAATTCA-
--AAAAGTCAA
 C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACAAATTCA------
GACCACATTCATACAAT
 A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GACAAATTCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PH0108.1_Msx3/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GACAAATTCA---
CAAAACCAATTAATTT
 A C G T A C G T A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GACAAATTCA
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GACAAATTCA
--CTAATTAG
 C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GACAAATTCA---
AAAAACCAATTAAGAA
 A C G T A C G T A C G T C T A G G T C A A G T C G T C A C G T A C G T A G A C T A C G T A G T C C G T A A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A