Information for 20-ATTTTATGTACA (Motif 17)

C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
p-value:1e-9
log p-value:-2.076e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets97.8 +/- 56.6bp
Average Position of motif in Background83.9 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTTTATGTACA-
CCATTGTATGCAAAT
 A C G T A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATTTTATGTACA----
NNNTTTGTTTACTTTTN
 A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATTTTATGTACA-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTTTATGTACA-
NNANTTTTATTGGNNN
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATTTTATGTACA-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATTTTATGTACA
-TTTTATGGCM-
 C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A
A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T

NFIL3/MA0025.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATTTTATGTACA--
---TTATGTAACAT
 C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATTTTATGTACA
NTTTTATGAC--
 C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATTTTATGTACA------
-NTNTATGTGCACATNNN
 C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATTTTATGTACA--
NAATTTTATTACCNNN
 A C G T A C G T C G T A A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C C G T A A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T