Information for 23-CTGTCTGT (Motif 21)

A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T
Reverse Opposite:
C G T A A T G C C G T A A C T G C G T A A G T C C G T A A C T G
p-value:1e-2
log p-value:-4.681e+00
Information Content per bp:1.958
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif9.38%
Number of Background Sequences with motif988.3
Percentage of Background Sequences with motif2.82%
Average Position of motif in Targets82.1 +/- 57.3bp
Average Position of motif in Background97.8 +/- 82.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CTGTCTGT
CTGTCTGG
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTGT
VBSYGTCTGG
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTGTCTGT--
VCCTCTCTGDDY
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTGT-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGTCTGT
TWGTCTGV
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGTCTGT-----
CTGTCTGTCACCT
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTGT
GCTGTG---
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

PBX2/MA1113.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTGT---
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T
A T G C T A G C G A C T T C A G G A C T T G A C G T C A T G C A G A C T G T A C G C T A A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTGTCTGT-----
-TGTCTGDCACCT
 A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTGT--
GSCTGTCACTCA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A