Information for 20-GTCACAWCGCCC (Motif 18)

A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C
Reverse Opposite:
A C T G T C A G A T C G A G T C C A T G C G A T A C G T A C T G C G A T A C T G C G T A A T G C
p-value:1e-3
log p-value:-7.062e+00
Information Content per bp:1.636
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets151.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCACAWCGCCC-
AGGTCACCCTGACCT
 A C G T A C G T A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0039.1_Klf7_1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCACAWCGCCC----
TCGACCCCGCCCCTAT
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T A C G T
G A C T A G T C C T A G T C G A G T A C G T A C T G A C G A T C C T A G A G T C A G T C A G T C G A T C G A C T G C T A C G A T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTCACAWCGCCC----
-NRGCCCCRCCCHBNN
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G A C T T C A G C T A G A G T C A G T C G T A C A G T C C T G A A G T C A G T C A G T C G A C T A G T C A C T G A T G C

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTCACAWCGCCC-----
CGAACAGTGCTCACTAT
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCACAWCGCCC
CNGTCACGCCAC--
 A C G T A C G T A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTCACAWCGCCC
NAGGTCACNNTGACC
 A C G T A C G T A C G T A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GTCACAWCGCCC----
CTATCCCCGCCCTATT
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T A C G T
A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GTCACAWCGCCC---
---ACAAAGGNBCCT
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Klf12/MA0742.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTCACAWCGCCC-----
--GACCACGCCCTTATT
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCACAWCGCCC
GTCACATGAY--
 A T C G C G A T A G T C C G T A G T A C G T C A C G T A G T A C T C A G A T G C A G T C A G T C
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T