Information for 17-TTTTATGTAC (Motif 21)

A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A G T C C G T A A C G T C G T A C G T A C G T A C G T A
p-value:1e-2
log p-value:-6.661e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif6.45%
Number of Background Sequences with motif61.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets90.1 +/- 50.3bp
Average Position of motif in Background87.5 +/- 78.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIL3/MA0025.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TTTTATGTAC---
--TTATGTAACAT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATGTAC--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PB0015.1_Foxa2_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGTAC-----
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

PH0117.1_Nkx3-1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTAC------
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTTATGTAC
TTTTATGGCM
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTTTATGTAC-
CTTTGATGTGSB
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T
A G T C G A C T A G C T C G A T A T C G G C T A C G A T A T C G C G A T A C T G T A C G A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATGTAC--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTTATGTAC-
TTTTATGGCTN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTAC
NTTTTATGAC-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGTAC----
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G