Information for 20-AMAGTATATA (Motif 18)

C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A
Reverse Opposite:
A C G T C T G A A G C T C T G A A G C T C G T A A T G C A C G T A C G T A C G T
p-value:1e-6
log p-value:-1.422e+01
Information Content per bp:1.821
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif17.95%
Number of Background Sequences with motif414.3
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets90.3 +/- 49.9bp
Average Position of motif in Background104.2 +/- 90.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AMAGTATATA------
ANNNGGATATATCCNNN
 A C G T C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AMAGTATATA--------
---GTATAAAAGGCGGGG
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AMAGTATATA--------
---GTATAAAAGGCGGGG
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AMAGTATATA------
TCTTTATATATAAATA
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AMAGTATATA
AAAGTAAACA
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AMAGTATATA
WAAGTAAAYA
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AMAGTATATA
AAAGTAAACA
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AMAGTATATA-----
AAAAAGTAAACAAAGAC
 A C G T A C G T C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AMAGTATATA--
-AAGGATATNTN
 C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AMAGTATATA----
CAAAGTAAACANNNN
 A C G T C G T A T G C A C G T A T A C G A C G T C T G A A G C T C T G A A G C T C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A