Information for 9-GCCTAGAC (Motif 19)

A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
Reverse Opposite:
A T C G A C G T A G T C C A G T C G T A A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.220e+01
Information Content per bp:1.915
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif10.26%
Number of Background Sequences with motif91.0
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets69.2 +/- 45.7bp
Average Position of motif in Background101.1 +/- 81.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GCCTAGAC-
TGTCTAGACG
 A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C A C G T
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCCTAGAC-
-TCTAGACA
 A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C A C G T
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAC
AGGCCTAG--
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGAC
AGGCCTNG--
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAC
TGACCTTGAN
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAC--
TGACCTTGACCT
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C A C G T A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAGAC
NNTGCCAAGNN
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCTAGAC--
--CCAGACAG
 A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C A C G T A C G T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAC--
TGACCTTGACCT
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C A C G T A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAGAC
TGACCTTGAV
 A C G T A C G T A C T G A G T C A G T C A C G T G T C A A C T G C G T A A T G C
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A