Information for 4-CGRTTKGA (Motif 3)

A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A
Reverse Opposite:
A G C T T G A C T G C A T G C A G C T A A G C T A T G C T C A G
p-value:1e-20
log p-value:-4.729e+01
Information Content per bp:1.599
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif56.41%
Number of Background Sequences with motif1247.0
Percentage of Background Sequences with motif3.91%
Average Position of motif in Targets108.9 +/- 53.4bp
Average Position of motif in Background100.2 +/- 110.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGRTTKGA--
--TATTGAYY
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T
A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CGRTTKGA---
--ATTTGAATT
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGRTTKGA---
-CCTTTGATGT
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGRTTKGA-----
---ATTGATTYND
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGRTTKGA------
NNTTCCTTTGATCTANA
 A C G T A C G T A C G T A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGRTTKGA------
AATCCCTTTGATCTATC
 A C G T A C G T A C G T A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGRTTKGA-----
---TTTGAAACCG
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGRTTKGA------
ATTTCCTTTGATCTATA
 A C G T A C G T A C G T A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGRTTKGA-
---GTGGAT
 A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T
A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGRTTKGA------
NNTTCCTTTGATCTNNA
 A C G T A C G T A C G T A G T C T A C G T C G A C G A T A C G T A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A